STAID: iterative deconvolution in spatial transcriptomics via deep learning and graph Fourier Transform

Main

• About
  • Key Features of STAID
  • Applications
• System Requirments
  • OS requirements
• Installation Guide
  • 1. Create a virtual environment
  • 2. Install STAID
  • 3. Install Torch
  • 4. Test installation and set up Jupyter Notebook (optional)
• Data Preparation
  • Transcriptomics data
  • Example Datasets
• References
• Release
• Contact
• Tutorial on human breast cancer dataset.
  • 1. Import packages
  • 2. Load data
  • 3. Preprocessing
  • 4. Run deconvolution
  • 5. Visualization